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  Self-supervised machine learning pushes the sensitivity limit in label-free detection of single proteins below 10 kDa

Dahmardeh, M., Mirzaalian Dastjerdi, H., Mazal, H., Köstler, H., & Sandoghdar, V. (2023). Self-supervised machine learning pushes the sensitivity limit in label-free detection of single proteins below 10 kDa. Nature Methods, 20, 442-447. doi:10.1038/s41592-023-01778-2.

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 Creators:
Dahmardeh, Mahyar1, 2, Author           
Mirzaalian Dastjerdi, Houman1, Author           
Mazal, Hisham1, 2, Author           
Köstler, Harald3, Author
Sandoghdar, Vahid1, 2, 3, Author           
Affiliations:
1Sandoghdar Division, Max Planck Institute for the Science of Light, Max Planck Society, ou_2364722              
2Sandoghdar Division, Max-Planck-Zentrum für Physik und Medizin, Max Planck Institute for the Science of Light, Max Planck Society, ou_3596674              
3Friedrich-Alexander-Univerisität Erlangen-Nürnberg, ou_persistent22              

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 Abstract: Interferometric scattering (iSCAT) microscopy is a label-free optical method capable of detecting single proteins, localizing their binding positions with nanometer precision, and measuring their mass. In the ideal case, iSCAT is limited by shot noise such that collection of more photons should extend its detection sensitivity to biomolecules of arbitrarily low mass. However, a number of technical noise sources combined with speckle-like background fluctuations have restricted the detection limit in iSCAT. Here, we show that an unsupervised machine learning isolation forest algorithm for anomaly detection pushes the mass sensitivity limit by a factor of 4 to below 10 kDa. We implement this scheme both with a user-defined feature matrix and a self-supervised FastDVDNet and validate our results with correlative fluorescence images recorded in total internal reflection mode. Our work opens the door to optical investigations of small traces of biomolecules and disease markers such as α-synuclein, chemokines and cytokines.

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Language(s): eng - English
 Dates: 2023-02-27
 Publication Status: Issued
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 Identifiers: DOI: 10.1038/s41592-023-01778-2
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Title: Nature Methods
  Other : Nature Methods
Source Genre: Journal
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Publ. Info: New York, NY : Nature Publishing Group
Pages: - Volume / Issue: 20 Sequence Number: - Start / End Page: 442 - 447 Identifier: ISSN: 1548-7091
CoNE: https://pure.mpg.de/cone/journals/resource/111088195279556