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  Admixture has obscured signals of historical hard sweeps in humans

Souilmi, Y., Tobler, R., Johar, A., Williams, M., Grey, S. T., Schmidt, J., et al. (2022). Admixture has obscured signals of historical hard sweeps in humans. Nature Ecology & Evolution, s41559-022-01914-9. doi:10.1038/s41559-022-01914-9.

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(last seen: Nov. 2022)
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Supplementary Tables 1–4. (Supplementary material)
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 Creators:
Souilmi, Yassine, Author
Tobler, Raymond, Author
Johar, Angad, Author
Williams, Matthew, Author
Grey, Shane T., Author
Schmidt, Joshua, Author
Teixeira, João C., Author
Rohrlach, Adam Ben1, Author                 
Tuke, Jonathan, Author
Johnson, Olivia, Author
Gower, Graham, Author
Turney, Chris, Author
Cox, Murray, Author
Cooper, Alan, Author
Huber, Christian D., Author
Affiliations:
1Archaeogenetics, Max Planck Institute for the Science of Human History, Max Planck Society, ou_2074310              

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Free keywords: Molecular evolution, Population genetics
 Abstract: The role of natural selection in shaping biological diversity is an area of intense interest in modern biology. To date, studies of positive selection have primarily relied on genomic datasets from contemporary populations, which are susceptible to confounding factors associated with complex and often unknown aspects of population history. In particular, admixture between diverged populations can distort or hide prior selection events in modern genomes, though this process is not explicitly accounted for in most selection studies despite its apparent ubiquity in humans and other species. Through analyses of ancient and modern human genomes, we show that previously reported Holocene-era admixture has masked more than 50 historic hard sweeps in modern European genomes. Our results imply that this canonical mode of selection has probably been underappreciated in the evolutionary history of humans and suggest that our current understanding of the tempo and mode of selection in natural populations may be inaccurate.

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Language(s): eng - English
 Dates: 2022-10-31
 Publication Status: Published online
 Pages: 13
 Publishing info: -
 Table of Contents: Ancient human genomes uncover historical hard sweeps
Hard sweeps were common in ancient West Eurasian populations
A historical hard sweep in the MHC-III region
Admixture can obscure historical hard sweeps
Evolutionary scenarios underlying sweep signal dilution
The mutational basis of the Eurasian hard sweeps
Discussion
Methods
 Rev. Type: Peer
 Identifiers: DOI: 10.1038/s41559-022-01914-9
Other: shh3344
 Degree: -

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Title: Nature Ecology & Evolution
  Abbreviation : Nat. Ecol. Evol.
Source Genre: Journal
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Publ. Info: London : Nature Publishing Group
Pages: - Volume / Issue: - Sequence Number: s41559-022-01914-9 Start / End Page: - Identifier: ISSN: 2397-334X
CoNE: https://pure.mpg.de/cone/journals/resource/2397-334X