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  Genetic manipulation and targeted protein degradation in mammalian systems: practical considerations, tips and tricks for discovery research

Giandomenico, S., & Schuman, E. M. (2023). Genetic manipulation and targeted protein degradation in mammalian systems: practical considerations, tips and tricks for discovery research. FEBS Open Bio, 13(7), 1164-1176. doi:10.1002/2211-5463.13581.

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アイテムのパーマリンク: https://hdl.handle.net/21.11116/0000-000D-4950-7 版のパーマリンク: https://hdl.handle.net/21.11116/0000-000D-6CFB-0
資料種別: Review Article

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FEBS Open Bio - 2023 - Giandomenico - Genetic manipulation and targeted protein degradation in mammalian systems practical.pdf (出版社版), 633KB
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https://hdl.handle.net/21.11116/0000-000D-4952-5
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FEBS Open Bio - 2023 - Giandomenico - Genetic manipulation and targeted protein degradation in mammalian systems practical.pdf
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application/pdf / [MD5]
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FEBS Open Bio (2023)Ó2023 The Authors.FEBS Open Biopublished by John Wiley & Sons Ltd on behalf ofFederation of European Biochemical Societies.This is an open access article under the terms of theCreative Commons AttributionLicense, which permits use,distribution and reproduction in any medium, provided the original work is properly cited.

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https://pubmed.ncbi.nlm.nih.gov/36815235/ (全文テキスト(全般))
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作成者

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 作成者:
Giandomenico , Stefano1, 著者
Schuman, Erin M.1, 著者                 
所属:
1Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society, ou_2461710              

内容説明

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キーワード: CRISPR; TPD; delivery; differentiation; neuroscience.
 要旨: Gaining a mechanistic understanding of the molecular pathways underpinning cellular and organismal physiology invariably relies on the perturbation of an experimental system to infer causality. This can be achieved either by genetic manipulation or by pharmacological treatment. Generally, the former approach is applicable to a wider range of targets, is more precise, and can address more nuanced functional aspects. Despite such apparent advantages, genetic manipulation (i.e., knock-down, knock-out, mutation, and tagging) in mammalian systems can be challenging due to problems with delivery, low rates of homologous recombination, and epigenetic silencing. The advent of CRISPR-Cas9 in combination with the development of robust differentiation protocols that can efficiently generate a variety of different cell types in vitro has accelerated our ability to probe gene function in a more physiological setting. Often, the main obstacle in this path of enquiry is to achieve the desired genetic modification. In this short review, we will focus on gene perturbation in mammalian cells and how editing and differentiation of pluripotent stem cells can complement more traditional approaches. Additionally, we introduce novel targeted protein degradation approaches as an alternative to DNA/RNA-based manipulation. Our aim is to present a broad overview of recent approaches and in vitro systems to study mammalian cell biology. Due to space limitations, we limit ourselves to providing the inexperienced reader with a conceptual framework on how to use these tools, and for more in-depth information, we will provide specific references throughout.

資料詳細

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言語: eng - English
 日付: 2023-07-03
 出版の状態: オンラインで出版済み
 ページ: -
 出版情報: -
 目次: -
 査読: -
 識別子(DOI, ISBNなど): DOI: 10.1002/2211-5463.13581
PMID: 36815235
 学位: -

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Project information

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Project name : Revealing the Landscape of Synaptic Diversity by Cell type- and Synapse-specific Proteomics and Transcriptomics (DiverseSynapse)
Grant ID : 101054512
Funding program : Horizon Europe (HE)
Funding organization : European Commission (EC)
Project name : CRC 1080: Molecular and Cellular Mechanisms of Neural Homeostasis
Grant ID : 221828878
Funding program : -
Funding organization : -
Project name : Defining feedback between protein synthesis and proteasomal degradation during synaptic proteostasis
Grant ID : -
Funding program : FEBS Long Term Fellowship
Funding organization : Federation of European Biochemical Societies
Project name : Understanding the feedback between protein synthesis and degradation during synaptic proteostasis (NeUPStasis)
Grant ID : -
Funding program : Marie Skłodowska-Curie-Stipendium Hessen
Funding organization : Ministerium für Wissenschaft und Kunst (HMWK)

出版物 1

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出版物名: FEBS Open Bio
種別: 学術雑誌
 著者・編者:
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出版社, 出版地: Wiley
ページ: - 巻号: 13 (7) 通巻号: - 開始・終了ページ: 1164 - 1176 識別子(ISBN, ISSN, DOIなど): ISSN: 2211-5463
CoNE: https://pure.mpg.de/cone/journals/resource/2211-5463