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  Mapping the electronic transitions of protonation sites in peptides using soft X-ray action spectroscopy

Leroux, J., Kotobi, A., Hirsch, K., Lau, T., Ortiz-Mahecha, C., Maksimov, D., et al. (2023). Mapping the electronic transitions of protonation sites in peptides using soft X-ray action spectroscopy. Physical Chemistry Chemical Physics, 25(37), 25603-25618. doi:10.1039/D3CP02524A.

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 Creators:
Leroux, J.1, 2, Author
Kotobi, A.2, 3, Author
Hirsch, K.4, Author
Lau, T.4, Author
Ortiz-Mahecha, C.5, Author
Maksimov, D.6, Author           
Meißner, R.3, 5, Author
Oostenrijk, B.7, Author
Rossi, M.6, Author           
Schubert, K.2, Author
Timm, M.4, Author
Trinter, F.8, 9, Author
Unger, I.10, Author
Zamudio-Bayer, V.4, Author
Schwob, L.2, Author
Bari, S.2, 7, 11, Author
Affiliations:
1CIMAP, CEA/CNRS/ENSICAEN/Université de Caen Normandie, ou_persistent22              
2Deutsches Elektronen-Synchrotron DESY, ou_persistent22              
3Helmholtz-Zentrum Hereon, Institute of Surface Science, ou_persistent22              
4Abteilung Hochempfindliche Röntgenspektroskopie, Helmholtz-Zentrum Berlin für Materialien und Energie, ou_persistent22              
5Hamburg University of Technology, Institute of Polymers and Composites, ou_persistent22              
6Simulations from Ab Initio Approaches, Theory Department, Max Planck Institute for the Structure and Dynamics of Matter, Max Planck Society, ou_3185035              
7The Hamburg Centre for Ultrafast Imaging, ou_persistent22              
8Institut für Kernphysik, Goethe-Universität Frankfurt am Main, ou_persistent22              
9Molecular Physics, Fritz-Haber-Institut der Max-Planck-Gesellschaft, ou_persistent22              
10Department of Physics and Astronomy, Uppsala University, ou_persistent22              
11Zernike Institute for Advanced Materials, University of Groningen, ou_persistent22              

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 Abstract: Near-edge X-ray absorption mass spectrometry (NEXAMS) around the nitrogen and oxygen K-edges was employed on gas-phase peptides to probe the electronic transitions related to their protonation sites, namely at basic side chains, the N-terminus and the amide oxygen. The experimental results are supported by replica exchange molecular dynamics and density-functional theory and restricted open-shell configuration with single calculations to attribute the transitions responsible for the experimentally observed resonances. We studied five tailor-made glycine-based pentapeptides, where we identified the signature of the protonation site of N-terminal proline, histidine, lysine and arginine, at 406 eV, corresponding to N 1s → σ*(NHx+) (x = 2 or 3) transitions, depending on the peptides. We compared the spectra of pentaglycine and triglycine to evaluate the sensitivity of NEXAMS to protomers. Separate resonances have been identified to distinguish two protomers in triglycine, the protonation site at the N-terminus at 406 eV and the protonation site at the amide oxygen characterized by a transition at 403.1 eV.

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Language(s): eng - English
 Dates: 2023-05-312023-08-162023-09-182023-10-07
 Publication Status: Issued
 Pages: 16
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1039/D3CP02524A
 Degree: -

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Project name : This research was supported by the Centre for Molecular Water Science (CMWS) in an Early Science Project. J. L. acknowledges the Région Normandie (France) for funding within the NANOHYDRAD project. L. S. and S. B. acknowledge funding by the Helmholtz Initiative and Networking Fund. This work is supported by the Cluster of Excellence ‘CUI: Advanced Imaging of Matter’ of the Deutsche Forschungsgemeinschaft (DFG) – EXC 2056 – project ID 390715994 and Grant-No. HIDSS-0002 DASHH (Data Science in Hamburg-HELMHOLTZ Graduate School for the Structure of Matter). F. T. acknowledges support by the MaxWater initiative of the Max-Planck-Gesellschaft. We thank Helmholtz-Zentrum Berlin for the allocation of synchrotron radiation beamtime at BESSY II at the beamline UE52-PGM. The Ion Trap end station at UE52-PGM is partially supported by the BMBF grant 05K16VF1. Parts of this research were carried out at PETRA III, at DESY, a member of the Helmholtz Association and we would like to thank Moritz Hoesch, Kai Bagschik and Frank Scholz for assistance in using the PETRA III beamline P04.
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Title: Physical Chemistry Chemical Physics
  Abbreviation : Phys. Chem. Chem. Phys.
Source Genre: Journal
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Publ. Info: Cambridge, England : Royal Society of Chemistry
Pages: - Volume / Issue: 25 (37) Sequence Number: - Start / End Page: 25603 - 25618 Identifier: ISSN: 1463-9076
CoNE: https://pure.mpg.de/cone/journals/resource/954925272413_1