Bulk annotation workflow with omero.forms

Fortmann-Grote, Carsten

doi:https://zenodo.org/doi/10.5281/zenodo.4777496

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Bulk annotation workflow with omero.forms

Fortmann-Grote, C. (2021). Bulk annotation workflow with omero.forms. doi:https://zenodo.org/doi/10.5281/zenodo.4777496.

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Item Permalink: https://hdl.handle.net/21.11116/0000-000E-74DD-7 Version Permalink: https://hdl.handle.net/21.11116/0000-000E-74DE-6

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Creators:
Fortmann-Grote, Carsten¹, Author

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1Department Microbial Population Biology, Max Planck Institute for Evolutionary Biology, Max Planck Society, ou_2421699

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Abstract: n this video we present how users of the Omero Image Database (https://www.openmicroscopy.org/) can import additional metadata from a spreadsheet (e.g. during a microscopy session) and attach the information as key-value pairs (MapAnnotation) to the corresponding image. Our workflow combines the "omero-forms" plugin (https://pypi.org/project/omero-forms/) with the "Omero Bulk Annotation Tools" script collection from https://github.com/mpievolbio-scicomp/obat.

This video is a "flash talk" contribution for the OME Community Meeting 2021.

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Language(s): eng - English

Dates: Published Online: 2021-05-21

Publication Status: Published online

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Identifiers: DOI: https://zenodo.org/doi/10.5281/zenodo.4777496

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Title: OME Community Meeting (Session Research Data Management), online

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Start-/End Date: 2021-06-08 - 2021-06-11

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