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  Spurious transcription causing innate immune responses is prevented by 5-hydroxymethylcytosine

Wu, F., Li, X., Looso, M., Liu, H., Ding, D., Guenther, S., et al. (2024). Spurious transcription causing innate immune responses is prevented by 5-hydroxymethylcytosine. NATURE GENETICS, 55(1), 100-+. doi:10.1038/s41588-022-01252-3.

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 Creators:
Wu, Fan1, Author           
Li, Xiang1, Author           
Looso, Mario2, Author           
Liu, Hang1, Author           
Ding, Dong3, Author           
Guenther, Stefan1, Author           
Kuenne, Carsten2, Author           
Liu, Shuya4, Author           
Weissmann, Norbert, Author
Boettger, Thomas1, Author           
Atzberger, Ann5, Author           
Kolahian, Saeed, Author
Renz, Harald, Author
Offermanns, Stefan4, Author           
Gaertner, Ulrich, Author
Potente, Michael6, Author           
Zhou, Yonggang1, Author           
Yuan, Xuejun1, Author           
Braun, Thomas1, Author           
Affiliations:
1Cardiac Development and Remodeling, Max Planck Institute for Heart and Lung Research, Max Planck Society, ou_2591695              
2Bioinformatics, Max Planck Institute for Heart and Lung Research, Max Planck Society, ou_2591704              
3Max Planck Institute for Heart and Lung Research, Max Planck Society, ou_2324692              
4Pharmacology, Max Planck Institute for Heart and Lung Research, Max Planck Society, ou_2591696              
5Facs Service, Max Planck Institute for Heart and Lung Research, Max Planck Society, ou_2591706              
6Angiogenesis & Metabolism Laboratory, Max Planck Institute for Heart and Lung Research, Max Planck Society, ou_2591701              

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 Abstract: Generation of functional transcripts requires transcriptional initiation at regular start sites, avoiding production of aberrant and potentially hazardous aberrant RNAs. The mechanisms maintaining transcriptional fidelity and the impact of spurious transcripts on cellular physiology and organ function have not been fully elucidated. Here we show that TET3, which successively oxidizes 5-methylcytosine to 5-hydroxymethylcytosine (5hmC) and other derivatives, prevents aberrant intragenic entry of RNA polymerase II pSer5 into highly expressed genes of airway smooth muscle cells, assuring faithful transcriptional initiation at canonical start sites. Loss of TET3-dependent 5hmC production in SMCs results in accumulation of spurious transcripts, which stimulate the endosomal nucleic-acid-sensing TLR7/8 signaling pathway, thereby provoking massive inflammation and airway remodeling resembling human bronchial asthma. Furthermore, we found that 5hmC levels are substantially lower in human asthma airways compared with control samples. Suppression of spurious transcription might be important to prevent chronic inflammation in asthma.

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 Dates: 2023-12-202024-01-01
 Publication Status: Issued
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Title: NATURE GENETICS
Source Genre: Journal
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Pages: - Volume / Issue: 55 (1) Sequence Number: - Start / End Page: 100 - + Identifier: ISSN: 1061-4036