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Journal Article

Systematic imaging reveals features and changing localization of mRNAs in Drosophila development.

MPS-Authors
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Jambor,  Helena
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Surendranath,  Vineeth
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

/persons/resource/persons219287

Kalinka,  Alex T.
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

/persons/resource/persons219444

Mejstrik,  Pavel
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Saalfeld,  Stephan
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Tomancak,  Pavel
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Citation

Jambor, H., Surendranath, V., Kalinka, A. T., Mejstrik, P., Saalfeld, S., & Tomancak, P. (2015). Systematic imaging reveals features and changing localization of mRNAs in Drosophila development. eLife, 4: e05003.


Cite as: https://hdl.handle.net/21.11116/0000-0001-04CB-6
Abstract
mRNA localization is critical for eukaryotic cells and affects numerous transcripts, yet how cells regulate distribution of many mRNAs to their subcellular destinations is still unknown. We combined transcriptomics and systematic imaging to determine the tissue-specific expression and subcellular distribution of 5862 mRNAs during Drosophila oogenesis. mRNA localization is widespread in the ovary and detectable in all of its cell types-the somatic epithelial, the nurse cells, and the oocyte. Genes defined by a common RNA localization share distinct gene features and differ in expression level, 3'UTR length and sequence conservation from unlocalized mRNAs. Comparison of mRNA localizations in different contexts revealed that localization of individual mRNAs changes over time in the oocyte and between ovarian and embryonic cell types. This genome scale image-based resource (Dresden Ovary Table, DOT.