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ShinyCortex: Exploring Single-Cell Transcriptome Data From the Developing Human Cortex.

MPG-Autoren
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Treutlein,  Barbara
Max Planck Institute for Molecular Cell Biology and Genetics, Max Planck Society;

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Zitation

Kageyama, J., Wollny, D., Treutlein, B., & Camp, J. G. (2018). ShinyCortex: Exploring Single-Cell Transcriptome Data From the Developing Human Cortex. Frontiers in neuroscience, 12: 315. doi:10.3389/fnins.2018.00315.


Zitierlink: https://hdl.handle.net/21.11116/0000-0003-F60D-A
Zusammenfassung
Single-cell mRNA sequencing (scRNA-seq) is a powerful method to identify and classify cell types and reconstruct differentiation trajectories within complex tissues, such as the developing human cortex. scRNA-seq data also enables the discovery of cell type-specific marker genes and genes that regulate developmental transitions. Here we provide a brief overview of how scRNA-seq has been shaping the study of human cortex development, and present ShinyCortex, a resource that brings together data from recent scRNA-seq studies of the developing cortex for further analysis. ShinyCortex is based in R and displays recently published scRNA-seq data from the human and mouse cortex in a comprehensible, dynamic and accessible way, suitable for data exploration by biologists.