Researcher Portfolio

Shevchenko, Andrej

Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society

Researcher Profile

Position: Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society

Researcher ID: https://pure.mpg.de/cone/persons/resource/persons218972

External references

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Publications

(1 - 25 of 204)

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: Bebelman, M. P., Belicova, L., Gralinska, E., Jumel, T., Lahree, A., Sommer, S., Shevchenko, A., Zatsepin, T., Kalaidzidis, Y., Vingron, M., & Zerial, M. (2024). Hepatocyte differentiation requires anisotropic expansion of bile canaliculi. Development (Cambridge, England), 151(22): dev202777. doi:10.1242/dev.202777. [PubMan] : Kopczynski, D., Ejsing, C. S., McDonald, J. G., Bamba, T., Baker, E. S., Bertrand-Michel, J., Brügger, B., Coman, C., Ellis, S. R., Garrett, T. J., Griffiths, W. J., Guan, X. L., Han, X., Höring, M., Holčapek, M., Hoffmann, N., Huynh, K., Lehmann, R., Jones, J. W., Kaddurah-Daouk, R., Köfeler, H. C., Meikle, P. J., Metz, T. O., O'Donnell, V. B., Saigusa, D., Schwudke, D., Shevchenko, A., Torta, F., Vizcaíno, J. A., Welti, R., Wenk, M. R., Wolrab, D., Xia, Y., Ekroos, K., Ahrends, R., & Liebisch, G. (2024). The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data. Journal of lipid research, 65(9): 100621. doi:10.1016/j.jlr.2024.100621. [PubMan] : Kumar, M., Has, C., Lam-Kamath, K., Ayciriex, S., Dewett, D., Bashir, M., Poupault, C., Schuhmann, K., Thomas, H., Knittelfelder, O., Raghuraman, B. K., Ahrends, R., Rister, J., & Shevchenko, A. (2024). Eye proteome of Drosophila melanogaster. Proteomics, 24(10): e2300330. doi:10.1002/pmic.202300330. [PubMan] : Kumar, M., Has, C., Lam-Kamath, K., Ayciriex, S., Dewett, D., Bashir, M., Poupault, C., Schuhmann, K., Thomas, H., Knittelfelder, O., Raghuraman, B. K., Ahrends, R., Rister, J., & Shevchenko, A. (2024). Lipidome Unsaturation Affects the Morphology and Proteome of the Drosophila Eye. Journal of proteome research, 23(4), 1188-1199. doi:10.1021/acs.jproteome.3c00570. [PubMan] : Jumel, T., & Shevchenko, A. (2024). Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics. Journal of proteome research, 23(2), 684-691. doi:10.1021/acs.jproteome.3c00531. [PubMan] : Schmeisser, K., Kaptan, D., Raghuraman, B. K., Shevchenko, A., Rodenfels, J., Penkov, S., & Kurzchalia, T. V. (2024). Mobilization of cholesterol induces the transition from quiescence to growth in Caenorhabditis elegans through steroid hormone and mTOR signaling. Communications biology, 7(1): 121. doi:10.1038/s42003-024-05804-7. [PubMan] : Skiba, N. P., Lewis, T. R., Spencer, W. C., Castillo, C. M., Shevchenko, A., & Arshavsky, V. Y. (2023). Absolute Quantification of Photoreceptor Outer Segment Proteins. Journal of proteome research, 22(8), 2703-2713. doi:10.1021/acs.jproteome.3c00267. [PubMan] : Ni, Z., Wölk, M., Jukes, G., Espinosa, K. M., Ahrends, R., Aimo, L., Alvarez-Jarreta, J., Andrews, S., Andrews, R., Bridge, A., Clair, G. C., Conroy, M. J., Fahy, E., Gaud, C., Goracci, L., Hartler, J., Hoffmann, N., Kopczyinki, D., Korf, A., Lopez-Clavijo, A. F., Malik, A., Ackerman, J. M., Molenaar, M. R., O'Donovan, C., Pluskal, T., Shevchenko, A., Slenter, D., Siuzdak, G., Kutmon, M., Tsugawa, H., Willighagen, E. L., Xia, J., O'Donnell, V. B., & Fedorova, M. (2023). Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods, 20(2), 193-204. doi:10.1038/s41592-022-01710-0. [PubMan] : Trautenberg, L. C., Brankatschk, M., Shevchenko, A., Wigby, S., & Reinhardt, K. (2022). Ecological lipidology. eLife, 11: e79288. doi:10.7554/eLife.79288. [PubMan] : McDonald, J. G., Ejsing, C. S., Kopczynski, D., Holčapek, M., Aoki, J., Arita, M., Arita, M., Baker, E. S., Bertrand-Michel, J., Bowden, J. A., Brügger, B., Ellis, S. R., Fedorova, M., Griffiths, W. J., Han, X., Hartler, J., Hoffmann, N., Koelmel, J. P., Köfeler, H. C., Mitchell, T. W., O'Donnell, V. B., Saigusa, D., Schwudke, D., Shevchenko, A., Ulmer, C. Z., Wenk, M. R., Witting, M., Wolrab, D., Xia, Y., Ahrends, R., Liebisch, G., & Ekroos, K. (2022). Introducing the Lipidomics Minimal Reporting Checklist. Nature metabolism, 4(9), 1086-1088. doi:10.1038/s42255-022-00628-3. [PubMan] : Kumar, M., Has, C., Lam-Kamath, K., Ayciriex, S., Dewett, D., Bashir, M., Poupault, C., Schuhmann, K., Knittelfelder, O., Raghuraman, B. K., Ahrends, R., Rister, J., & Shevchenko, A. (2022). Vitamin A Deficiency Alters the Phototransduction Machinery and Distinct Non-Vision-Specific Pathways in the Drosophila Eye Proteome. Biomolecules, 12(8): 1083. doi:10.3390/biom12081083. [PubMan] : Rudolph, M., Wang, Y., Simolka, T., Huc-Claustre, E., Dai, L., Grotenbreg, G., Besra, G., Shevchenko, A., Shevchenko, A., & Zeissig, S. (2022). Sortase A-Cleavable CD1d Identifies Sphingomyelins as Major Class of CD1d-Associated Lipids. Frontiers in immunology, 13: 897873. doi:10.3389/fimmu.2022.897873. [PubMan] : Seth, A., Landau, M., Shevchenko, A., Traikov, S., Schultz, A., Elsabbagh, S., & Schultz, J. E. (2022). Distinct glycerophospholipids potentiate Gsα-activated adenylyl cyclase activity. Cellular signalling, 97: 110396. doi:10.1016/j.cellsig.2022.110396. [PubMan] : Patsenker, E., Thangapandi, V. R., Knittelfelder, O., Palladini, A., Hefti, M., Beil-Wagner, J., Rogler, G., Buch, T., Shevchenko, A., Hampe, J., & Stickel, F. (2022). The PNPLA3 variant I148M reveals protective effects toward hepatocellular carcinoma in mice via restoration of omega-3 polyunsaturated fats. The Journal of nutritional biochemistry, 108: 109081. doi:10.1016/j.jnutbio.2022.109081. [PubMan] : Rzagalinski, I., Bogdanova, A., Raghuraman, B. K., Geertsma, E. R., Hersemann, L., Ziemssen, T., & Shevchenko, A. (2022). FastCAT Accelerates Absolute Quantification of Proteins Using Multiple Short Nonpurified Chimeric Standards. Journal of proteome research, 21(6), 1408-1417. doi:10.1021/acs.jproteome.2c00014. [PubMan] : Skeffington, A. W., Gentzel, M., Ohara, A., Milentyev, A., Heintze, C., Böttcher, L., Görlich, S., Shevchenko, A., Poulsen, N., & Kröger, N. (2022). Shedding light on silica biomineralization by comparative analysis of the silica-associated proteomes from three diatom species. The Plant journal: for cell and molecular biology, 110(6), 1700-1716. doi:10.1111/tpj.15765. [PubMan] : Ott, F., Körner, C., Werner, K., Gericke, M., Liebscher, I., Lobsien, D., Radrezza, S., Shevchenko, A., Hofmann, U., Kratzsch, J., Gebhardt, R., Berg, T., & Matz-Soja, M. (2022). Hepatic Hedgehog Signaling Participates in the Crosstalk between Liver and Adipose Tissue in Mice by Regulating FGF21. Cells, 11(10): 1680. doi:10.3390/cells11101680. [PubMan] : Raghuraman, B. K., Bogdanova, A., Moon, H., Rzagalinski, I., Geertsma, E. R., Hersemann, L., & Shevchenko, A. (2022). Median-Based Absolute Quantification of Proteins Using Fully Unlabeled Generic Internal Standard (FUGIS). Journal of proteome research, 21(1), 132-141. doi:10.1021/acs.jproteome.1c00596. [PubMan] : Girard, V., Jollivet, F., Knittelfelder, O., Celle, M., Arsac, J.-N., Chatelain, G., Brink, D. M. V. d., Baron, T., Shevchenko, A., Kühnlein, R. P., Davoust, N., & Mollereau, B. (2021). Abnormal accumulation of lipid droplets in neurons induces the conversion of alpha-Synuclein to proteolytic resistant forms in a Drosophila model of Parkinson's disease. PLoS genetics, 17(11): e1009921. doi:10.1371/journal.pgen.1009921. [PubMan] : Vvedenskaya, O., Rose, T. D., Knittelfelder, O., Palladini, A., Wodke, J. A., Schuhmann, K., Ackerman, J. M., Wang, Y., Has, C., Brosch, M., Thangapandi, V. R., Buch, S., Züllig, T., Hartler, J., Köfeler, H. C., Röcken, C., Coskun, Ü., Klipp, E., Schoenfels, W. v., Gross, J., Schafmayer, C., Hampe, J., Pauling, J. K., & Shevchenko, A. (2021). Nonalcoholic fatty liver disease stratification by liver lipidomics. Journal of lipid research, 62: 100104. doi:10.1016/j.jlr.2021.100104. [PubMan] : Köfeler, H. C., Eichmann, T. O., Ahrends, R., Bowden, J. A., Danne-Rasche, N., Dennis, E. A., Fedorova, M., Griffiths, W. J., Han, X., Hartler, J., Holčapek, M., Jirásko, R., Koelmel, J. P., Ejsing, C. S., Liebisch, G., Ni, Z., O'Donnell, V. B., Quehenberger, O., Schwudke, D., Shevchenko, A., Wakelam, M. J. O., Wenk, M. R., Wolrab, D., & Ekroos, K. (2021). Quality control requirements for the correct annotation of lipidomics data. Nature communications, 12(1): 4771. doi:10.1038/s41467-021-24984-y. [PubMan] : Ecker, J., Benedetti, E., Kindt, A. S. D., Höring, M., Perl, M., Machmüller, A. C., Sichler, A., Plagge, J., Wang, Y., Zeissig, S., Shevchenko, A., Burkhardt, R., Krumsiek, J., Liebisch, G., & Janssen, K.-P. (2021). The colorectal cancer lipidome - identification of a robust tumor-specific lipid species signature. Gastroenterology, DOI: 10.1053/j.gastro.2021.05.009. doi:10.1053/j.gastro.2021.05.009. [PubMan] : Fu, T., Knittelfelder, O., Geffard, O., Clément, Y., Testet, E., Elie, N., Touboul, D., Abbaci, K., Shevchenko, A., Lemoine, J., Chaumot, A., Salvador, A., Degli-Esposti, D., & Ayciriex, S. (2021). Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition. iScience, 24(2): 102115. doi:10.1016/j.isci.2021.102115. [PubMan] : Heier, C., Knittelfelder, O., Hofbauer, H. F., Mende, W., Pörnbacher, I., Schiller, L., Schoiswohl, G., Xie, H., Grönke, S., Shevchenko, A., & Kühnlein, R. P. (2021). Hormone-sensitive lipase couples intergenerational sterol metabolism to reproductive success. eLife, 10: e63252. doi:10.7554/eLife.63252. [PubMan] : Hebbar, S., Schuhmann, K., Shevchenko, A., & Knust, E. (2020). Hydroxylated sphingolipid biosynthesis regulates photoreceptor apical domain morphogenesis. The Journal of cell biology, 219(12): e201911100. doi:10.1083/jcb.201911100. [PubMan]