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  Brain simulation as a cloud service: The Virtual Brain on EBRAINS

Schirner, M., Domide, L., Perdikis, D., Triebkorn, P., Stefanovski, L., Pai, R., et al. (2022). Brain simulation as a cloud service: The Virtual Brain on EBRAINS. NeuroImage, 251: 118973. doi:10.1016/j.neuroimage.2022.118973.

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 Creators:
Schirner, Michael, Author
Domide, Lia, Author
Perdikis, Dionysios, Author
Triebkorn, Paul, Author
Stefanovski, Leon, Author
Pai, Roopa, Author
Prodan, Paula, Author
Valean, Bogdan, Author
Palmer, Jessica, Author
Langford, Chloê, Author
Blickensdörfer, André, Author
van der Vlag, Michiel, Author
Diaz-Pier, Sandra, Author
Peyser, Alexander, Author
Klijn, Wouter, Author
Pleiter, Dirk, Author
Nahm, Anne, Author
Schmid, Oliver, Author
Woodman, Marmaduke, Author
Zehl, Lyuba, Author
Fousek, Jan, AuthorPetkoski, Spase, AuthorKusch, Lionel, AuthorHashemi, Meysam, AuthorMarinazzo, Daniele, AuthorMangin, Jean-François, AuthorFlöel, Agnes, AuthorAkintoye, Simisola, AuthorStahl, Bernd Carsten, AuthorCepic, Michael, AuthorJohnson, Emily, AuthorDeco, Gustavo1, Author              McIntosh, Anthony R., AuthorHilgetag, Claus C., AuthorMorgan, Marc, AuthorSchuller, Bernd, AuthorUpton, Alex, AuthorMcMurtrie, Colin, AuthorDickscheid, Timo, AuthorBjaalie, Jan G., AuthorAmunts, Katrin, AuthorMersmann, Jochen, AuthorJirsa, Viktor, AuthorRitter, Petra, Author more..
Affiliations:
1Department Neuropsychology, MPI for Human Cognitive and Brain Sciences, Max Planck Society, ou_634551              

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Free keywords: Brain modelling; Cloud; Connectome; Data protection; High performance computing; Network model; Neuroimaging; Reproducibility
 Abstract: The Virtual Brain (TVB) is now available as open-source services on the cloud research platform EBRAINS. It offers software for constructing, simulating and analysing brain network models including the TVB simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional brain networks; combined simulation of large-scale brain networks with small-scale spiking networks; automatic conversion of user-specified model equations into fast simulation code; simulation-ready brain models of patients and healthy volunteers; Bayesian parameter optimization in epilepsy patient models; data and software for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability, and clinical translation.

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Language(s): eng - English
 Dates: 2022-02-022021-11-302022-02-032022-02-042022-05-01
 Publication Status: Published in print
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.1016/j.neuroimage.2022.118973
Other: epub 2022
PMID: 35131433
 Degree: -

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Project name : -
Grant ID : 683049
Funding program : -
Funding organization : European Research Council
Project name : -
Grant ID : 800858
Funding program : Horizon 2020
Funding organization : European Union

Source 1

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Title: NeuroImage
Source Genre: Journal
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Affiliations:
Publ. Info: Orlando, FL : Academic Press
Pages: - Volume / Issue: 251 Sequence Number: 118973 Start / End Page: - Identifier: ISSN: 1053-8119
CoNE: https://pure.mpg.de/cone/journals/resource/954922650166