Researcher Portfolio

 
   

Youngblut, Nicholas D

Department Microbiome Science, Max Planck Institute for Biology Tübingen, Max Planck Society, Department Microbiome Science, Max Planck Institute for Developmental Biology, Max Planck Society, Max Planck Institute for Biology Tübingen, Max Planck Society, Max Planck Institute for Developmental Biology, Max Planck Society  

 

Researcher Profile

 
Position: Max Planck Institute for Biology Tübingen, Max Planck Society
Position: Max Planck Institute for Developmental Biology, Max Planck Society
Position: Department Microbiome Science, Max Planck Institute for Biology Tübingen, Max Planck Society
Position: Department Microbiome Science, Max Planck Institute for Developmental Biology, Max Planck Society
Additional IDs: ORCID: https://orcid.org/0000-0002-7424-5276
MPIB: nyoungblut
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons270526

Publications

 
  (1 - 25 of 48)
 : Ngwese, M., Adegbite, B., Zinsou, J., Fitzstevens, J., Schmidt, V., Moure, A., Maloum, M., Tyakht, A., Huus, K., Youngblut, N., Kremsner, P., Adegnika, A., & Ley, R. (submitted). Infection with gut parasites correlates with gut microbiome diversity across human populations in Africa. [PubMan] : Dimore, A., Kuplicki, R., McDonald, D., Kumar, M., Estaki, M., Youngblut, N., Tyakht, A., Ackermann, G., Blach, C., MahmoudianDehkordi, S., Dunlop, B., Bhattacharyya, S., Guinjoan, S., Mandaviya, P., Ley, R., Kaddaruh-Dauok, R., Paulus, M., Knight, R., & Alzheimer Gut Microbiome Project Consortium (2025). Medication Use is Associated with Distinct Microbial Features in Anxiety and Depression. Molecular Psychiatry, Epub ahead. doi:10.1038/s41380-024-02857-2. [PubMan] : Li, Z., Cranganore, S., Youngblut, N., & Kilbertus, N. (submitted). Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity. [PubMan] : Fitzstevens, L., Liu, X., Ruaud, A., Schmidt, V., Mbong Ngwese, M., Youngblut, N., Rauch, J., Suzuki, T., Ha, N., Arzamasov, A., Rodionov, D., Pfister, N., Thams, N., Adegbite, B., Zinsou, J., Esen, M., Velavan, T., Adegnika, A., Song, L., Kremsner, P., Ostermann, A., Tyakht, A., & Ley, R. (2024). Bifidobacteria compensate for genotype in lactose tolerance. Poster presented at 75th Mosbacher Kolloquium "The Microbiome - from Understanding to Modulation", Mosbach, Germany. [PubMan] : de la Cuesta Zuluaga, J., Huus, K., Youngblut, N., Escobar, J., & Ley, R. (2023). Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy. Gut Microbes, 15(2): 2246634. doi:10.1080/19490976.2023.2246634. [PubMan] : Huus, K., Esen, M., μ. Study Group, Dauser, S., Loum, S., Youngblut, N., Tyakht, A., & Ley, R. (2023). Vaccine-induced fevers are associated with diet and the gut microbiome. In 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023) (pp. 21). [PubMan] : Fitzstevens, L., Liu, X., Ruaud, A., Schmidt, V., Mbong, M., Rauch, J., Nguyen Thu, H., Adegbite, B., Zinsou, J., Esen, M., Velavan, T., Adegnika, A., Song, L., Kremsner, P., Youngblut, N., Tyakht, A., & Ley, R. (2023). Bifidobacteria confer microbiome-acquired lactose tolerance in genetically lactase-non persistent humansrts. Poster presented at 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany. [PubMan] : Casini, I., McCubbin, T., Esquivel-Elizondo, S., Luque, G., Evseeva, D., Fink, C., Beblawy, S., Youngblut, N., Aristilde, L., Huson, D., Dräger, A., Ley, R., Marcellin, E., Angenent, L., & Molitor, B. (2023). An integrated systems-biology approach reveals differences in formate metabolism in the genus Methanothermobacter. iScience, 26(10): 108016. doi:10.1016/j.isci.2023.108016. [PubMan] : Tyakht, A., Youngblut, N., Dauser, S., Knight, R., Dorrenstein, P., Estaki, M., Victor, T., Kosciólek, T., Paulus, M., Spector, T., & Ley, R. (2023). Unveiling reproducible gut microbiome alterations in anxiety: enhanced aromatic amino acid metabolism across cohorts. Poster presented at 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany. [PubMan] : Liu, Y., Tyakht, A., Youngblut, N., & Ley, R. (2023). Determining the ecological roles of Methanobrevibacter smithii adhesins-like-proteins (ALPs) in the gut. Poster presented at 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany. [PubMan] : Clasen, S., Bell, M., Borbón, A., Lee, D.-H., Henseler, Z., de la Cuesta-Zuluaga, J., Parys, K., Zou, J., Wang, Y., Altmannova, V., Youngblut, N., Weir, J., Gewirtz, A., Belkhadir, Y., & Ley, R. (2023). Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. In Cell Symposia: Infection Biology in the Age of the Microbiome. [PubMan] : Clasen, S., Bell, M., Borbón, A., Lee, D.-H., Henseler, Z., de la Cuesta-Zuluaga, J., Parys, K., Zou, J., Wang, Y., Altmannova, V., Youngblut, N., Weir, J., Gewirtz, A., Belkhadir, Y., & Ley, R. (2023). Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. In Cell Symposia: Infection Biology in the Age of the Microbiome. [PubMan] : Huus, K., Esen, M., Gabor, J., Gaile, J., Fleischmann, W., Smeenk, G., Krauser, A., Siebner, A., Flügge, J., Roggendorf, E., Allgayer De Moraes, R., Dauser, S., Loum, S., Youngblut, N., & Ley, R. (2023). Fever-microbiome interactions during human vaccination: The µHEAT study. Poster presented at Cell Symposia: Infection Biology in the Age of the Microbiome, Paris, France. [PubMan] : Ruaud, A., Pfister, N., Ley, R., & Youngblut, N. (2023). Enhancing the application of machine learning models to microbiome data with endoR. Poster presented at Cell Symposia: Infection Biology in the Age of the Microbiome, Paris, France. [PubMan] : Mineeva, O., Danciu, D., Schölkopf, B., Ley, R., Rätsch, G., & Youngblut, N. (2023). ResMiCo: increasing the quality of metagenome-assembled genomes with deep learning. PLoS Computational Biology, 19(5): e1011001. doi:10.1371/journal.pcbi.1011001. [PubMan] : Clasen, S., Bell, M., Borbón, A., Lee, D.-H., Henseler, Z., de la Cuesta-Zuluaga, J., Parys, K., Zou, J., Wang, Y., Altmannova, V., Youngblut, N., Weir, J., Gewirtz, A., Belkhadir, Y., & Ley, R. (2023). Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science Immunology, 8(79): eabq7001. doi:10.1126/sciimmunol.abq7001. [PubMan] : Clasen, S., Bell, M., Borbón, A., Lee, D.-H., Henseler, Z., de la Cuesta-Zuluaga, J., Parys, K., Zou, J., Wang, Y., Altmannova, V., Youngblut, N., Weir, J., Gewirtz, A., Belkhadir, Y., & Ley, R. (2023). Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science Immunology, 8(79): eabq7001. doi:10.1126/sciimmunol.abq7001. [PubMan] : Ruaud, A., Pfister, N., Ley, R., & Youngblut, N. (2022). Interpreting tree ensemble machine learning models with endoR. PLoS Computational Biology, 18(12): e1010714. doi:10.1371/journal.pcbi.1010714. [PubMan] : Wilhelm, R., Barnett, S., Swenson, T., Youngblut, N., Koechli, C., Bowen, P., Northen, T., & Buckley, D. (2022). Tracing carbon metabolism with stable isotope metabolomics reveals the legacy of diverse carbon sources in soil. Applied and Environmental Microbiology, 88(22): e0083922. doi:10.1128/aem.00839-22. [PubMan] : Barnett, S., Youngblut, N., & Buckley, D. (2022). Bacterial community dynamics explain carbon mineralization and assimilation in soils of different land-use history. Environmental Microbiology, 24(11), 5230-5247. doi:10.1111/1462-2920.16146. [PubMan] : Welter, D., Ruaud, A., Henseler, Z., De Jong, H., van Coeverden de Groot, P., Michaux, J., Gormezano, L., Waters, J., Youngblut, N., & Ley, R. (in press). Free-living psychrophilic bacteria of the genus Psychrobacter are descendants of pathobionts. mSystems. doi:10.1101/2020.10.23.352302. [PubMan] : Youngblut, N., de la Cuesta-Zuluaga, J., & Ley, R. (2022). Incorporating genome-based phylogeny and functional similarity into diversity assessments helps to resolve a global collection of human gut metagenomes. Environmental Microbiology, 24(9), 3966-3984. doi:10.1111/1462-2920.15910. [PubMan] : Suzuki, T., Fitzstevens, J., Schmidt, V., Enav, H., Huus, K., Mbong Ngwese, M., Grießhammer, A., Pfleiderer, A., Adegbite, B., Zinsou, J., Esen, M., Velavan, T., Adegnika, A., Song, L., Spector, T., Muehlbauer, A., Marchi, N., Kang, H., Maier, L., Blekhman, R., Ségurel, L., Ko, G., Youngblut, N., Kremsner, P., & Ley, R. (2022). Codiversification of gut microbiota with humans. Science, 377(6612), 1328-1332. doi:10.1126/science.abm7759. [PubMan] : Youngblut, N., Reischer, G., Dauser, S., Maisch, S., Walzer, C., Stalder, G., Farnleitner, A., & Ley, R. (2021). Vertebrate host phylogeny influences gut archaeal diversity. Nature Microbiology, 6(11), 1443-1454. doi:10.1038/s41564-021-00980-2. [PubMan] : Barnett, S., Youngblut, N., Koechli, C., & Buckley, D. (2021). Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling. Proceedings of the National Academy of Sciences of the United States of America, 118(47): e2115292118. doi:10.1073/pnas.2115292118. [PubMan]